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I don't understand what you are doing.
I mentioned you big difference between I2C_PWR_SCL/SDA_R1 lines; pins 1 & 4 of Q6950.
U7000, U7800 and U3900 are all connected there; look at page 47.
Clean J3700's contacts.
Check all its traces to adjacent components.
Just in case, bypass L3700 with a wire jumper.
Be sure none of C371x capacitors is ripped off.
Also check R3701/2.
If all good, try heating PCH.
PP1V8_UPC5_LDO is generated by U5500 for internal use.
It must appear when the Magsafe is connected.
Each port controller chip should generate 1.8/3.3V LDO when gets power.